Anatomy Ontologies for Bioinformatics: Principles and by Albert Burger, Duncan Davidson, Richard Baldock

By Albert Burger, Duncan Davidson, Richard Baldock

This e-book presents a well timed and first-of-its-kind choice of papers on anatomy ontologies. it truly is interdisciplinary in its method, bringing jointly the appropriate services from computing and biomedical reports. The ebook goals to supply readers with a complete figuring out of the rules of anatomical ontologies and the-state-of-the-art by way of present instruments and functions. It additionally highlights demanding situations that stay this present day.

Show description

Read or Download Anatomy Ontologies for Bioinformatics: Principles and Practice (Computational Biology) PDF

Similar bioinformatics books

Bioinformatics: Sequence, Structure and Databanks

Bioinformatics covers useful very important themes within the research of protein sequences and constructions. It comprises evaluating amino acid sequences to constructions evaluating constructions to one another, looking out details on complete protein households in addition to looking with unmarried sequences, how one can use the web and the way to establish and use the SRS molecular biology database administration method.

Modern physical methods in biochemistry

This quantity completes the account of actual equipment utilized in biochemistry that was once coated in quantity 11A, which was once released in 1985. It offers with quick response equipment, excessive functionality liquid chromatography of peptides and proteins, fluorescence spectroscopy, neutron and X-ray scattering recommendations, and likewise Raman and resonance spectroscopy that have lately been used to an expanding quantity in biochemistry.

Evolutionary Genomics and Systems Biology

A accomplished, authoritative examine an emergent region in post-genomic technology, Evolutionary genomics is an up-and-coming, complicated box that makes an attempt to give an explanation for the biocomplexity of the dwelling international. Evolutionary Genomics and structures Biology is the 1st full-length booklet to combination verified and rising options in bioinformatics, evolution, genomics, and structural biology, with the integrative perspectives of community and platforms biology.

Computational Intelligence Methods for Bioinformatics and Biostatistics: 10th International Meeting, CIBB 2013, Nice, France, June 20-22, 2013, Revised Selected Papers

This publication constitutes the completely refereed post-conferenceproceedings of the tenth foreign assembly on ComputationalIntelligence equipment for Bioinformatics and Biostatistics, CIBB 2013, held in great, France in June 2013. the nineteen revised complete papers offered have been rigorously reviewed andselected from 35 submissions.

Extra resources for Anatomy Ontologies for Bioinformatics: Principles and Practice (Computational Biology)

Example text

8. A. H. Kaufman, A. McKay, R. W. B. Bard. An ontology of human developmental anatomy. , 203:347–355, 2003. 9. H. Parkinson. et al. The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data. Comp. Func. , 5:521–527, 2004. 10. C. L. Jr. Mejino. A reference ontology for biomedical informatics: the foundational model of anatomy. , 36:478–500, 2003. 11. P. Simons. Parts: a study in ontology. Oxford University Press, Oxford, UK, 1987. 12. B. Smith. Mereotopology: A theory of parts and boundaries.

Reiser, A. M. T. Whitman, S. McCouch, M. H. Ware, L. Y Rhee. The plant structure ontology - a unified vocabulary of anatomy and morphology of a flowering plant. Plant Physiology, 143:587–599, 2007. 14. P. Jaiswal, S. Avraham, K. A. Kellogg, S. McCouch, A. Pujar, L. Y. M. Sachs, M. Schaeffer, L. Stein, P. Stevens, L. Vincent, D. Ware, and F. Zapata. Plant Ontology (PO): A controlled vocabulary of plant structures and growth stages. Comp Funct Genom, 6:388–397, 2005. 15. P. Jaiswal, J. Ni, I. Yap, D.

Shtml#in house). The browser has been slightly modified to suit specific requirements of the PO and its association files. Some browse and search functionalities of the PO AmiGO are displayed in Fig. 3a, which shows the top-level nodes in the screenshot of the browser. The obsolete plant structure node (grayed out) contains terms that are no longer in use in PSO, and are kept in the ontology file for historical and record keeping purposes. This node is placed at the same level as the PSO root node, plant structure (PO:0009011).

Download PDF sample

Rated 4.24 of 5 – based on 19 votes